PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08928
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 64aa    MW: 7677.84 Da    PI: 10.5221
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08928genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.6e-101261147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47
                     r++WT+  +  l+++v ++G g+Wk I    +   + R+  + k++++++
         EMT08928 12 RKKWTEIQERTLIEGVDKYGRGNWKDIKIAYPdvfQDRSTVDMKDKFRNL 61
                     79*********************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.145764IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-10961IPR009057Homeodomain-like
SuperFamilySSF466899.66E-141061IPR009057Homeodomain-like
SMARTSM007171.9E-41164IPR001005SANT/Myb domain
PfamPF002491.3E-81261IPR001005SANT/Myb domain
CDDcd116602.08E-161361No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MRPPPAVPYK TRKKWTEIQE RTLIEGVDKY GRGNWKDIKI AYPDVFQDRS TVDMKDKFRN  60
LGRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559737.12e-29PREDICTED: uncharacterized protein LOC100834855
RefseqXP_010233480.12e-29PREDICTED: uncharacterized protein LOC100834855
TrEMBLM8C1541e-41M8C154_AEGTA; Uncharacterized protein
TrEMBLW5C8G23e-41W5C8G2_WHEAT; Uncharacterized protein
TrEMBLM8AB053e-40M8AB05_TRIUA; Uncharacterized protein
TrEMBLW5B2Y24e-40W5B2Y2_WHEAT; Uncharacterized protein
STRINGMLOC_20213.22e-34(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139982224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.13e-12TRF-like 5